Top 25 Project Management Software with Invoicing 

Running projects without an integrated billing management system can feel like herding cats—one misplaced timesheet, an overlooked expense, or delayed payment can sink profitability. That’s why choosing the right project management software with invoicing is a game-changer.

Imagine a unified project management solution where you track time, monitor project progress, assign project tasks to team members, and then effortlessly create invoices tied to actual work and costs. All while syncing seamlessly with your accounting software, and automating invoicing processes. This is where a project management software with invoicing comes into the picture.

In this blog post, we’ll list down the Top 25 Project Management Software with Invoicing, explore a quick comparison of pricing and free trial options, list essential key features, and help you find the software that will streamline workflows, eliminate billing errors, and speed up payments. Ready to reclaim time and accelerate cash flow? Let’s dive in.

Why Get a Project Management Software with Invoicing?

Managing projects is hard enough—throw in time-tracking, expense control, and invoicing, and complexity explodes. That’s why savvy teams and freelancers invest in project management software with invoicing. Here’s what you gain:

• Streamlined workflows: Track time and expenses directly within project tasks, then create invoices with minimal effort.
• Reduced errors: Automating invoicing processes ensures sending invoices is accurate, timely, and professional.
• Enhanced visibility: Team leads see project progress, project milestones, and overall project health.
• Client convenience: Many tools feature client portal access—clients can review, approve, and pay in one spot.
• Seamless accounting integration: Sync invoices with accounting software for full-cycle financial clarity.

This unified approach boosts efficiency and billing accuracy while keeping clients in the loop—critical for scaling your operation.

10 Best Project Management Software with Invoicing

Below is a list of the 10 best project management software with invoicing:

1. Juntrax

An all-in-one business management software that integrates HRMS, PSA (project management), and financials. Juntrax is purpose-built for SMEs and startups in the professional services domain and offers comprehensive features with a custom pricing structure as per requirements.

2. Scoro

Designed for professional services and agencies, Scoro automates billing across time, fees, retainers, and project milestones. It syncs seamlessly with major accounting tools and offers recurring invoices to ensure timely cash flow.

Source: Scoro.com

3. Productive

A professional services automation tool that merges project management with budgeting, resource planning, time tracking, and multi-currency billing. It’s built to provide real-time profitability insights and streamline invoicing for agencies.

Source: Productive

4. Paymo

A task-focused PM tool that also covers time tracking, expense logging, and invoice generation. It’s ideal for small teams and creatives who need a unified view of projects and billing.

Source: Paymo

5. Harvest

Primarily a time-tracking solution, Harvest blends hours and expenses into formatted invoices, coupled with automated reminders and insightful financial reporting.

Source: Harvest

6. Wrike

An enterprise-grade PM solution that includes time and expense tracking, Gantt-based billing, and integrations with accounting tools—supporting comprehensive invoicing within complex workflows.

Source: Wrike

7. Bonsai

Freelancer-first software combining proposals, contracts, time tracking, invoicing, recurring payments, and client portals. It’s praised for its user-friendly interface and full lifecycle automation.

Source: Bonsai

8. actiTIME

A robust time-tracking solution that supports invoicing via customizable billable hours, cost and budgeting settings, and exportable invoice documents—popular among small teams.

Source: actiTIME

9. Zoho Projects + Invoice

Part of Zoho’s ecosystem, this offers invoicing, timesheets, and project milestone management. Known for its simplicity, transparent workflows, and seamless accounting integrations.

Source: Zoho

10. Avaza

Combining project boards, team chat, time tracking, expense logging, and built-in invoicing, Avaza empowers small teams with an all-in-one platform for collaboration and payments.

Project Management and Invoicing software: Quick Comparison

Top 25 Project Management and Invoicing Software Options

Here’s a comprehensive list of 25 project management billing software and project invoicing software —spanning freelancers, SMBs, agencies, and enterprises:

1. Juntrax
2. Scoro
3. Productive
4. Paymo
5. Harvest
6. Wrike
7. Bonsai
8. actiTIME
9. Zoho Invoice + Projects
10. Avaza
11. Ravetree
12. OneSuite
13. NetSuite
14. FinancialForce
15. WorkflowMax
16. Accelo
17. Kantata
18. Zistemo
19. Procore
20. Projectworks
21. VOGSY
22. Kaseya BMS
23. Plutio
24. Flowlu
25. Hubstaff

The above project management and invoicing softwares are chosen for combining project management features like task/milestone tracking and team coordination with robust invoicing software features—like invoice generation, client billing portals, time and expense linkage, and accounting integration.

Project Management Software with Invoicing: Top Features

1. Time & Expense Tracking – Critical for turning hours and costs into invoice line items.
2. Automated Invoice Generation – Enable recurring billing, late fee reminders, and real-time invoice creation.
3. Client Portal – Empowers clients to view project progress, invoices, payments, and communicate.
4. Project Planning Tools – Milestone tracking, task dependencies and other features to monitor project lifecycle.
5. Team Collaboration – Task assignment, file-sharing, tag mentions, and status updates across team members.
6. Accounting Integrations –  For full financial transparency.
7. Customizable Templates – Branded invoices that look professional and support tax and multi-currency needs.
8. Reporting & Analytics – Insights into profitability, time utilization, and billing efficiency.
9. Scalability & Permissions – Supports multiple clients, projects, and permission levels.
10. Free Trials or Demo – Allows you to test workflows end-to-end before buying

Conclusion: Best Project Management Software with Invoicing

For businesses seeking a unified Project Management and invoicing software, Juntrax emerges as the leading choice. It offers key features including:

• Full project management: task planning, milestone tracking, multi-location support.
• Advanced invoicing capabilities: client portal, time/expense conversion, and recurring billing.
• All in one business management software: integrates HRMS, Project management and financial modules in one system
• Transparent and custom pricing: Starting at $6/user with custom plans as per requirements.

Also Read: Best Billing Software for Small Business

FAQs: Project Management and Invoicing Software